Genome sequencing and data analysis, and microbiome

This is the webpage providing information for the genome sequencing and CS/DS module, Luddy summer camp 2022@Luddy, supported by a group of faculty members, students and staff. Please contact Prof. Yuzhen Ye if you have questions about the curriculum & activities for this module.

What microorganisms live in Bloomington lakes/ponds (and what do they do?)

• Overview (ppt),
• Where to get the data?
  Sampling collecting (2021):
  
  DNA sequencing (using MiSeq)
  
• Coding with coronavirus sequence to learn about the spike proteins, and water microbiome and learning about microbes in Bloomington ponds/lakes.
  Infer spike protein from genomic sequence: start code on google colab
  Exploratory data analysis (EDA): a demo code on google colab
  EDA of water microbiome analysis: start code on google colab